Conference: 251st ACS National Meeting & Exposition

On March 17, 2016, Posted by , In Conferences, By ,,,,,,, , With Comments Off on Conference: 251st ACS National Meeting & Exposition

251st ACS National Meeting & Exposition, San Diego, USA Herman van Vlijmen (Janssen) gave a presentation: Open PHACTS: Semantic interoperability for drug discovery Valery Tkachenko (Royal Society of Chemistry) gave a presentation: Implementing chemistry platform for Open PHACTS: Lessons learned Anna Gaulton (EMBL-EBI) gave a presentation: Representation of drug discovery knowledge in the…

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Presentation: Representation of drug discovery knowledge in the ChEMBL and SureChEMBL databases

On March 17, 2016, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Representation of drug discovery knowledge in the ChEMBL and SureChEMBL databases

251st ACS National Meeting & Exposition, San Diego, USA Anna Gaulton (EMBL-EBI) View presentation

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Poster: Semantic-Web Access to Patent Annotations

On December 7, 2015, Posted by , In Posters, By ,,,,,,,,,,, , With Comments Off on Poster: Semantic-Web Access to Patent Annotations

SWAT4LS International Conference 2015, Cambridge, UK View poster

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Conference: SWAT4LS 2015

On December 7, 2015, Posted by , In Conferences, By ,,,,,,,,,,,,,,,, , With Comments Off on Conference: SWAT4LS 2015

SWAT4LS International Conference 2015, Cambridge, UK Anna Gaulton (European Bioinformatics Institute) presented a poster: Semantic-Web Access to Patent Annotations Alasdair Gray (Heriot-Watt University) gave a presentation: Validata: An online tool for testing RDF data conformance Ryan Miller (Maastricht University) presented a poster: Where do you go from here? Semantics of directions in biological pathways…

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Publication: Managing expectations: assessment of chemistry databases generated by automated extraction of chemical structures from patents

On October 6, 2015, Posted by , In Publications, By ,,,,,, , With Comments Off on Publication: Managing expectations: assessment of chemistry databases generated by automated extraction of chemical structures from patents

First public disclosure of new chemical entities often takes place in patents, which makes them an important source of information. However, with an ever increasing number of patent applications, manual processing and curation on such a large scale becomes even more challenging. An alternative approach better suited for this large…

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Publication: Scientific Lenses to Support Multiple Views over Linked Chemistry Data

On October 19, 2014, Posted by , In Publications, By ,,,,,,,,,,,,,,,,,,,,,,,,, , With Comments Off on Publication: Scientific Lenses to Support Multiple Views over Linked Chemistry Data

When are two entries about a small molecule in different datasets the same? If they have the same drug name, chemical structure, or some other criteria? The choice depends upon the application to which the data will be put. However, existing Linked Data approaches provide a single global view over…

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Presentation: SureChEMBL – Open Patent Data

On June 1, 2014, Posted by , In Presentations, By ,,,, , With Comments Off on Presentation: SureChEMBL – Open Patent Data

10th ICCS, International Conference on Chemical Structures, Noordwijkerhout, the Netherlands Anna Gaulton (European Bioinformatics Institute) View presentation

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Publication: Transporter taxonomy – a comparison of different transport protein classification schemes

On April 5, 2014, Posted by , In Publications, By ,,,, , With Comments Off on Publication: Transporter taxonomy – a comparison of different transport protein classification schemes

Currently, there are more than 800 well characterized human membrane transport proteins (including channels and transporters) and there are estimates that about 10% (approx. 2000) of all human genes are related to transport. Membrane transport proteins are of interest as potential drug targets, for drug delivery, and as a cause…

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Publication: Transporter assays and assay ontologies: useful tools for drug discovery

On April 5, 2014, Posted by , In Publications, By ,,,,,, , With Comments Off on Publication: Transporter assays and assay ontologies: useful tools for drug discovery

Transport proteins represent an eminent class of drug targets and ADMET (absorption, distribution, metabolism, excretion, toxicity) associated genes. There exists a large number of distinct activity assays for transport proteins, depending on not only the measurement needed (e.g. transport activity, strength of ligand–protein interaction), but also due to heterogeneous assay…

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Presentation: Open PHACTS: An Introduction

On September 4, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Open PHACTS: An Introduction

diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) View presentation

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Conference: diXa Training Course

On September 4, 2013, Posted by , In Conferences, By ,,, , With Comments Off on Conference: diXa Training Course

diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) gave a presentation: Open PHACTS: An Introduction

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Conference: Bio-Assay Ontology Workshop

On April 16, 2013, Posted by , In Conferences, By ,,,,,,,,, , With Comments Off on Conference: Bio-Assay Ontology Workshop

Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) gave a presentation: ChEMBL bioassay data – Classification and data Exchange Mark Davies (EMBL-EBI) gave a presentation: ChEBML-RDF

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Presentation: ChEMBL bioassay data – Classification and data exchange

On April 16, 2013, Posted by , In Presentations, By ,,,,, , With Comments Off on Presentation: ChEMBL bioassay data – Classification and data exchange

Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) View presentation

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