Presentation: DisGeNET – A discovery platform for translational Research – RDF & SPARQL – Usage and Modeling Challenges

On December 3, 2015, Posted by , In Presentations, By ,,,,,, , With No Comments

SIB Training Course: Using the Semantic Web for faster (Bio-)Research, Geneva, 30 November – 3 December 2015 Núria Queralt (IMIM) View presentation

Conference: SIB Training Course: Using the Semantic Web for faster (Bio-)Research

On December 3, 2015, Posted by , In Conferences, By ,,,,,, , With No Comments

SIB Training Course: Using the Semantic Web for faster (Bio-)Research, Geneva, 30 November – 3 December 2015 Núria Queralt (IMIM) gave a presentation: DisGeNET – A discovery platform for translational Research – RDF & SPARQL – Usage and Modeling Challenges

DisGeNET v3.0 RDF now available

DisGeNET has just announced their latest RDF release, including: More GDAs comprising 17 000 genes and more than 14 000 diseases as linked data in the Semantic Web New disease-phenotype annotation data from the Human Phenotype Ontology New linksets A new full metadata description of the dataset compliant with the…

Publication: Guidelines for exposing data as RDF in Open PHACTS

This is a “how to” guide for exposing your data in RDF in the Open PHACTS system. Carina Haupt, Andra Waagmeester, Marc Zimmerman, Egon Willighagen Full publication: Open PHACTS Working Draft 07 October 2013

Publication: Encoding units and unit types in RDF using QUDT

On September 13, 2013, Posted by , In Publications, By ,,, , With No Comments

This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers. Egon Willighagen Full publication: Open PHACTS Working Draft 13 September 2013

Conference: Bio-Assay Ontology Workshop

Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) gave a presentation: ChEMBL bioassay data – Classification and data Exchange Mark Davies (EMBL-EBI) gave a presentation: ChEBML-RDF

Presentation: ChEMBL-RDF

Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Mark Davies (EMBL-EBI) View presentation

Open PHACTS guidelines

On March 27, 2013, Posted by , In News, By ,, , With No Comments

We now have two sets of public guidelines about Open PHACTS for data providers. Guidelines on exposing data as RDF in Open PHACTS. These guidelines are a “how to” guide for data providers who want to expose their data as RDF in the Open PHACTS platform. Dataset Description for the Open Pharmacological Space…

ChEMBL RDF Workshop held

The ChEMBL database is one of the most important sources of open drug discovery data and is a key part of linked data in the biomedical domain. Last week members of the Open PHACTS team, which includes the ChEMBL group, met at the EBI in Cambridge for a 2 day…

Project Meeting: Workshop

ChEMBL RDF Workshop (Cambridgeshire, UK)