Conference: Autumn School of Chemoinformatics
Autumn School of Chemoinformatics, Nara, Japan Marcus Gastreich (BioSolveIT GmbH) presented ChemBioNavigator
Presentation: WikiPathways: how open source code and open data can make omics technology more useful
Life Science Technology Event 2013, Leiden, Netherlands Chris Evelo (Maastricht University) View presentation
Conference: Life Science Technology Event
Life Science Technology Event 2013, Leiden, the Netherlands Chris Evelo (Maastricht University) gave a presentation: WikiPathways: how open source code and open data can make omics technology more useful
Publication: Pav ontology: provenance, authoring and versioning
We present the Provenance, Authoring and Versioning ontology (PAV): a lightweight ontology for capturing “just enough” descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators…
Presentation: The biggest problem of science: Ambiguity
HandsOn: Biobanks 2013, The Hague, Netherlands Jan Velterop (AQnowledge) View presentation
Conference: HandsOn: Biobanks 2013
HandsOn: Biobanks 2013, The Hague, the Netherlands Jan Velterop (AQnowledge) gave a presentation: The biggest problem of science: Ambiguity
Conference: EMBL-EBI Industry Programme Workshop
EMBL-EBI Industry Programme Workshop: Computational Tools for Chemical Biology, Phenotypic Screening and Target De-convolution, Cambridgeshire, UK Bryn Williams-Jones (Connected Discovery) represented Open PHACTS
Target Dossier released
It is our pleasure to announce the official release of Target Dossier, one of the Example Applications developed within the Open PHACTS project. The Target Dossier uses the Open PHACTS Discovery Platform to answer questions of tissue expression profiles, druggability, pathways and physiological mechanisms. Drug targets can be selected and further investigated….
Project Meeting: Workshop
Testing alpha API calls (Beerse, Belgium)
Presentation: Open PHACTS Discovery Platform – Integrating pharmacological and physicochemical data
Biochemical Society Workshop: Tools and Strategies to Find Chemical Probes for Your Protein, London, UK Jack Gibb (Royal Society of Chemistry) View presentation
Conference: Biochemical Society Workshop
Biochemical Society Workshop: Tools and Strategies to Find Chemical Probes for Your Protein, London, UK Jack Gibb (Royal Society of Chemistry) gave a presentation: Open PHACTS Discovery Platform – Integrating pharmacological and physicochemical data
Over 80% of Open PHACTS publications are open access
Over 80% of the publications from the Open PHACTS project are open access, available for anyone to read. A full list of our open access publications to date is below. 2013 On the formulation of performant SPARQL queries Scientific competency questions as the basis for semantically enriched open pharmacological space development…
Poster: Accessing Open PHACTS: Interactive exploration of compounds and targets from the semantic web
9th German Conference on Chemoinformatics, Fulda, Germany Katrin Stierand (University of Hamburg) View poster
Conference: 9th German Conference on Chemoinformatics
9th German Conference on Chemoinformatics, Fulda, Germany Katrin Stierand (University of Hamburg) presented a poster: Accessing Open PHACTS: Interactive exploration of compounds and targets from the semantic web
Over 3.5 million Open PHACTS API hits since launch
The Open PHACTS API has received over 3.5 million hits since its launch in January 2013.
Open PHACTS Foundation is part of proposal for IMI 9th Call
The recently established Open PHACTS Foundation is part of a proposal for IMI’s 9th Call: WEBAE – Leveraging Emerging Technology for Pharmacovigilance.
Over 200 Open PHACTS API users
230 individuals have registered for Open PHACTS API keys since the API launch in January 2013. If you haven’t already, sign up for your free API key now!
Open PHACTS Foundation part of a proposal for IMI’s 9th Call
The Open PHACTS Foundation is part of a proposal for IMI’s 9th Call – Leveraging Emerging Technology for Pharmacovigilance.
Managing Knowledge about Tissues IMI Workshop
Managing Knowledge about Tissues (Brussels, Belgium)
Presentation: Open PHACTS: How does it work? How can it work for tissue knowledge management?
Managing Knowledge about Tissues, Brussels, Belgium Christine Chichester (Swiss Institute of Bioinformatics) View presentation
Presentation: Knowledge management for transmembrane transporters
Managing Knowledge about Tissues, Brussels, Belgium Daniela Digles (University of Vienna) View presentation
Conference: ISWC 2013
ISWC 2013, The 12th International Semantic Web Conference, Sydney, Australia Paul Groth (VU University Amsterdam) and Carole Goble (University of Manchester) submitted a paper: Incorporating private and commercial data into an open linked data platform for drug discovery Alasdair Gray (Heriot-Watt University) gave a presentation for the ISWC 2013 Semantic Web…
Presentation: Incorporating Commercial and Private Data into an Open Linked Data Platform for Drug Discovery
ISWC 2013, The 12th International Semantic Web Conference, Sydney, Australia Alasdair Gray (Heriot-Watt University) View presentation
Open PHACTS welcomes Heriot-Watt as an Associated Partner
Open PHACTS extends a warm welcome to our new Associated Partner Heriot-Watt University. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!
Open PHACTS: The Future
Take a look at these slides to see what is next in Open PHACTS and how you can get involved: The Future of Open PHACTS
Publication: Incorporating private and commercial data into an open linked data platform for drug discovery
The Open PHACTS Discovery Platform aims to provide an integrated information space to advance pharmacological research in the area of drug discovery. Effective drug discovery requires comprehensive data coverage, i.e. integrating all available sources of pharmacology data. While many relevant data sources are available on the linked open data cloud,…
Publication: Including Co-referent URIs in a SPARQL Query
Linked data relies on instance level links between potentially differing representations of concepts in multiple datasets. However, in large complex domains, such as pharmacology, the inter-relationship of data instances needs to consider the context (e.g. task, role) of the user and the assumptions they want to apply to the data….
Conference: COLD 2013
COLD 2013, Fourth International Workshop on Consuming Linked Data, Sydney, Australia Alasdair Gray (Heriot-Watt University) gave a presentation: Including Co-referent URIs in a SPARQL Query, and a full paper with the same title was submitted