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Open PHACTS Pipeline Pilot Component Collection 2.0

BIOVIA have just released the latest Pipeline Pilot component collection for Open PHACTS: Download Open PHACTS Component Collection 2.0 This collection connects to the latest version of the Open PHACTS API, version 2.0, and enables protocol developers and users to access the Open PHACTS Discovery Platform through easy-to-use Pipeline Pilot…

Webinar: SureChEMBL Patent Annotations in Open PHACTS

George Papadatos (EMBL-EBI) gives an overview of the SureChEMBL data integration with the Open PHACTS Discovery Platform, focussing on practical details of use cases and business questions that can be answered with the combination of the Open PHACTS API and workflow tools. Watch webinar video | View webinar slides

Conference: 251st ACS National Meeting & Exposition

251st ACS National Meeting & Exposition, San Diego, USA Herman van Vlijmen (Janssen) gave a presentation: Open PHACTS: Semantic interoperability for drug discovery Valery Tkachenko (Royal Society of Chemistry) gave a presentation: Implementing chemistry platform for Open PHACTS: Lessons learned Anna Gaulton (EMBL-EBI) gave a presentation: Representation of drug discovery knowledge in the…

Presentation: Open PHACTS: Semantic interoperability for drug discovery

On March 17, 2016, Posted by , In Presentations, By ,,, , With No Comments

251st ACS National Meeting & Exposition, San Diego, USA Herman van Vlijmen (Janssen) View presentation

Presentation: Implementing chemistry platform for Open PHACTS: Lessons learned

251st ACS National Meeting & Exposition, San Diego, USA Valery Tkachenko (Royal Society of Chemistry) View presentation

Presentation: Representation of drug discovery knowledge in the ChEMBL and SureChEMBL databases

On March 17, 2016, Posted by , In Presentations, By ,,, , With No Comments

251st ACS National Meeting & Exposition, San Diego, USA Anna Gaulton (EMBL-EBI) View presentation

Webinar: SureChEMBL Patent Annotations

Now that the Open PHACTS project is complete, we’re opening our regular discussions about using Open PHACTS for science up to the whole community, with a series of free monthly webinars. Our first webinar will be about SureChEMBL Patent Annotations, on Monday, 21 March at 15:00 GMT. Register now for…

Publication: The FAIR Guiding Principles for scientific data management and stewardship

There is an urgent need to improve the infrastructure supporting the reuse of scholarly data. A diverse set of stakeholders—representing academia, industry, funding agencies, and scholarly publishers—have come together to design and jointly endorse a concise and measureable set of principles that we refer to as the FAIR Data Principles….

Conference: RD-Connect Annual Meeting 2016

RD-Connect Annual Meeting 2016, Barcelona, Spain Marco Roos (Leiden University Medical Center) held a training session, using Open PHACTS as paradigm for data linkage solutions and a source of drug compound information

Newsletter 9: What’s next for Open PHACTS?

Contents Project wrap-up Joining the Foundation Webinar series: Science and Open PHACTS Platform updates View newsletter Sign up for the Open PHACTS Newsletter

Conference: ELIXIR All Hands 2016

ELIXIR All Hands 2016, Barcelona, Spain Marco Roos (Leiden University Medical Center) held a training session, using Open PHACTS as paradigm for data linkage solutions and a source of drug compound information

Conference: KNIME Spring Summit 2016

KNIME Spring Summit 2016, Berlin, Germany Daniela Digles (University of Vienna) presented Creating workflows for drug-discovery with Open PHACTS and KNIME, and George Papadatos (EMBL-EBI) presented Leveraging Open Chemogenomics Data and Tools with KNIME

Presentation: Leveraging Open Chemogenomics Data and Tools with KNIME

KNIME Spring Summit 2016, Berlin, Germany George Papadatos (EMBL-EBI) View presentation

Presentation: Creating workflows for drug-discovery with Open PHACTS and KNIME

KNIME Spring Summit 2016, Berlin, Germany Daniela Digles (University of Vienna) View presentation

Conference: Freie Universität Berlin Pharmaceutical Research Colloquium

On February 24, 2016, Posted by , In Conferences, By ,, , With No Comments

Freie Universität Berlin Pharmaceutical Research Colloquium, Winter Semester 2015/2016, Berlin, Germany Gerhard Ecker (University of Vienna) gave a presentation: The power of open data – Linking transporter interaction profiles to in vivo toxicity

Presentation: The power of open data – Linking transporter interaction profiles to in vivo toxicity

Freie Universität Berlin Pharmaceutical Research Colloquium, Winter Semester 2015/2016, Berlin, Germany Gerhard Ecker (University of Vienna) View presentation

Completion of the Open PHACTS project

On February 23, 2016, Posted by , In News, By , , With No Comments

On 18–19 February, 2016, we celebrated the successful completion of the Open PHACTS project with a conference on linking life science data in Vienna, Austria. 79 attendees from a broad cross-section of backgrounds gathered to discuss what lessons have been learned from the success of Open PHACTS, and how the…

Linking Life Science Data: Design to Implementation, and Beyond

Open PHACTS project closing conference (Vienna, Austria)

Conference: 15th Annual Advances and Progress in Drug Design Conference 2016

15th Annual Advances and Progress in Drug Design Conference, London, UK Herman van Vlijmen (Janssen) gave a presentation: Linked open data in drug discovery: Where are we?

Presentation: Linked open data in drug discovery: Where are we?

Advances and Progress in Drug Design, London, UK Herman van Vlijmen (Janssen) View presentation

Publication: Selectivity profiling of BCRP versus P-gp inhibition: from automated collection of polypharmacology data to multi-label learning

The human ATP binding cassette transporters Breast Cancer Resistance Protein (BCRP) and Multidrug Resistance Protein 1 (P-gp) are co-expressed in many tissues and barriers, especially at the blood–brain barrier and at the hepatocyte canalicular membrane. Understanding their interplay in affecting the pharmacokinetics of drugs is of prime interest. In silico…

Open PHACTS Newsletter 8

Contents API 2.0 is here Decommissioning API 1.4 Upcoming conference: Linking Life Science Data New Foundation member: University of Vienna View newsletter Sign up for the Open PHACTS Newsletter

New Foundation Member: University of Vienna

On February 3, 2016, Posted by , In News, By ,,, , With No Comments

A long-time partner of the Open PHACTS project, the University of Vienna has committed to supporting the Open PHACTS Foundation as our first academic member. Professor Gerhard Ecker and his colleagues bring a wealth of expertise and experience in linked pharmacological data to the Foundation, and we are excited about…

Conference: Reproducibility of Data-Oriented Experiments in e-Science

Schloss Dagstuhl Conference on Reproducibility of Data-Oriented Experiments in e-Science, Leibniz, Germany Carole Goble and Stian Soiland-Reyes (University of Manchester) presented their work on the research-object-based data release platform developed for Open PHACTS

Open PHACTS API 2.0 is here

We’re excited to announce the official release of version 2.0 of the Open PHACTS API, along with major updates to the linked data in the Open PHACTS Discovery Platform. Try out API version 2.0 now Highlights include: Complete refresh of chemistry data sets, including ChEMBL 20 Reload and refresh of…

Linking Life Science Data: Final speakers and agenda

There are just three weeks to go until our conference, Linking Life Science Data: From Design to Implementation, and Beyond. If you haven’t yet registered, attendance is free and there are still places available: Register now The conference will include a variety of expert speakers and open discussions on linking…

Linking Life Science Data: Preliminary agenda

We are pleased to present the preliminary agenda for our upcoming conference, Linking Life Science Data: Design to Implementation, and Beyond. View agenda » Updates will be announced over the coming weeks as the agenda and speakers are finalised; register your interest now to keep up to date with the…

Presentation: Validata: An online tool for testing RDF data conformance

SWAT4LS International Conference 2015, Cambridge, UK Alasdair Gray (Heriot-Watt University) View presentation

Poster: Where do you go from here? Semantics of directions in biological pathways

SWAT4LS International Conference 2015, Cambridge, UK View poster

Poster: Semantic-Web Access to Patent Annotations

SWAT4LS International Conference 2015, Cambridge, UK View poster