Presentation: Real-World Open PHACTS Use Cases
EBI Industry Workshop: Data integration and its application Lee Harland (Connected Discovery) View presentation
Publication: Provenance: An Introduction to PROV
The World Wide Web is now deeply intertwined with our lives, and has become a catalyst for a data deluge, making vast amounts of data available online, at a click of a button. With Web 2.0, users are no longer passive consumers, but active publishers and curators of data. Hence,…
Publication: Encoding units and unit types in RDF using QUDT
This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers. Egon Willighagen Full publication: Open PHACTS Working Draft 13 September 2013
Presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project
246th ACS National Meeting & Exposition, Indianapolis, USA Antony Williams (Royal Society of Chemistry) View presentation
Publication: Dataset Descriptions for the Open Pharmacological Space
This is a specification for the metadata to described datasets, and the linksets that relate them, to enable their use within the Open PHACTS discovery platform. The specification defines the metadata properties that are expected to describe datasets and linksets; detailing the creation and publication of the dataset. Details of…
Presentation: Open PHACTS: An Introduction
diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) View presentation
Webinar: Using the Open PHACTS API
Paul Groth (VU University Amsterdam) presents a webinar explaining how to use the Open PHACTS API: the data, technical setup, and what can be done with it. Watch presentation video | View presentation slides
Presentation: Opening Up Pharmacological Space: The Open PHACTS API
2013 ISMB/ECCB Conference, Berlin, Germany Chris Evelo (Maastricht University) View presentation
Poster: Scientific Lenses: An Approach to Dynamically Vary the Relationships between Datasets
2013 ISMB/ECCB Conference, Berlin, Germany View poster
Presentation: The Open Pharmacological Concepts Triple Store
Translational Knowledge Management in Pharmaceutical R&D, Brussels, Belgium Gerhard Ecker (University of Vienna) View presentation
Presentation: Mashing Up Drug Discovery: There’s an API for that
18th CICAG meeting: New Developments in Chemical Information: ‘Best Practice’, London, UK Lee Harland (Connected Discovery) View presentation
Presentation: Identifiers.org: Practical Integration tool for heterogeneous datasets
BioHackathon Symposium, Tokyo, Japan Nick Juty (EMBL-EBI) View presentation
Presentation: The future of the science publishing ego-system
LIBER 42nd Annual Conference, Munich, Germany Jan Velterop (AQnowledge) View presentation
Presentation: Open PHACTS + KNIME: Easy access to linked pharmacology data
KNIME User Day UK 2013, London, UK Ronald Siebes (VU University Amsterdam) View presentation
Presentation: Open PHACTS: a precompetitive infrastructure for pharmacological research
Infotech 2013, London, UK Bryn Williams-Jones (Connected Discovery) View presentation
Presentation: Open PHACTS: Data integration for all
14th Annual Drug Discovery Summit, Geneva, Switzerland Andrew Leach (GlaxoSmithKline) View presentation
Presentation: Addressing Research Questions by Integration of Open PHACTS with Pipeline Pilot
Accelrys Solutions for Enhancing Research Innovation, Frankfurt, Germany Christian Herhaus (Merck KGaA) View presentation
Presentation: ChEMBL-RDF
Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Mark Davies (EMBL-EBI) View presentation
Presentation: ChEMBL bioassay data – Classification and data exchange
Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) View presentation
Presentation: Open PHACTS: meaningful linking of preclinical drug discovery knowledge
245th ACS National Meeting & Exposition, New Orleans, USA Egon Willighagen (Maastricht University) View presentation
Poster: Collaborative curation for identifiers.org
Biocuration 2013 – The Conference of the International Society for Biocuration, Cambridge, UK View poster
Presentation: Enabling Drug Discovery Applications Through a Linked Data Platform
CSHALS, Conference on Semantics in Healthcare and Life Sciences, Boston, USA Alasdair Gray (Heriot-Watt University) Presentation details
Presentation: The Path to Linked Data in BioPharma
Molecular Med Tri-Con 2013, San Francisco, USA Tom Plasterer (AstraZeneca) View presentation
Publication: Human diseases through the lens of network biology
One of the challenges raised by next generation sequencing (NGS) is the identification of clinically relevant mutations among all the genetic variation found in an individual. Network biology has emerged as an integrative and systems-level approach for the interpretation of genome data in the context of health and disease. Network…
Publication: Scientific Lenses over Linked Data: An approach to support task specific views of the data. A vision.
Within complex scientific domains such as pharmacology, operational equivalence between two concepts is often context-, user- and task-specific. Existing Linked Data integration procedures and equivalence services do not take the context and task of the user into account. We present a vision for enabling users to control the notion of operational…
Presentation: Practical Semantics In The Pharmaceutical Industry – The Open PHACTS Project
EKAW 2012: 18th International Conference on Knowledge Engineering and Knowledge Management, Galway City, Ireland Lee Harland (Connected Discovery) View presentation video Read conference paper
Publication: Open PHACTS: A semantic knowledge infrastructure for public and commercial drug discovery research
Technology advances in the last decade have led to a “digital revolution” in biomedical research. Much greater volumes of data can be generated in much less time, transforming the way researchers work. Yet, for those seeking to develop new drugs to treat human disease, the task of assembling a coherent…