Open PHACTS Foundation

Yearly Archives: <span>2013</span>

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Open PHACTS welcomes LEO Pharma as an Associated Partner

On June 6, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS welcomes LEO Pharma as an Associated Partner

Open PHACTS extends a warm welcome to our new Associated Partner LEO Pharma. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

Press Release: Open PHACTS Community Workshop: “Using the power of Open PHACTS”

On May 31, 2013, Posted by , In Press Releases, By ,,,,,, , With Comments Off on Press Release: Open PHACTS Community Workshop: “Using the power of Open PHACTS”

(PDF) London, UK – The Open PHACTS Community Workshop was held at Burlington House in London on April 22 and 23, 2013. The workshop was intended to feature the public release of the Open PHACTS API and the first Open PHACTS example apps, ChemBioNavigator and PharmaTrek. The event was also held…

Open PHACTS Foundation established

On May 29, 2013, Posted by , In News, By , With Comments Off on Open PHACTS Foundation established

A major milestone towards sustainability has been reached: The Open PHACTS Foundation, a not-for-profit membership organisation supporting the Open PHACTS Discovery Platform, has been established. Find out more about the aims of the Open PHACTS Foundation and about how to get involved.

Conference: 10th ESWC 2013

On May 27, 2013, Posted by , In Conferences, By ,,,, , With Comments Off on Conference: 10th ESWC 2013

10th ESWC 2013, Montpellier, France Paul Groth (VU University Amsterdam) presented Open PHACTS

Project Meeting: Workpackage Leader Group

On May 22, 2013, Posted by , In Project Meetings, By , With Comments Off on Project Meeting: Workpackage Leader Group

5th Workpackage Leader Group meeting (Gothenburg, Sweden)

Publication: Scientific competency questions as the basis for semantically enriched open pharmacological space development

Molecular information systems play an important part in modern data-driven drug discovery. They do not only support decision making but also enable new discoveries via association and inference. In this review, we outline the scientific requirements identified by the Innovative Medicines Initiative (IMI) Open PHACTS consortium for the design of…

Open PHACTS welcomes three new Associated Partners

On May 16, 2013, Posted by , In News, By ,,,,, , With Comments Off on Open PHACTS welcomes three new Associated Partners

Open PHACTS extends a warm welcome to our new Associated Partners Advanced Chemistry Development, Erasmus University Medical Center Rotterdam (Dept. of Medical Informatics), and Massachusetts General Hospital. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

Presentation: Addressing Research Questions by Integration of Open PHACTS with Pipeline Pilot

On May 14, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Addressing Research Questions by Integration of Open PHACTS with Pipeline Pilot

Accelrys Solutions for Enhancing Research Innovation, Frankfurt, Germany Christian Herhaus (Merck KGaA) View presentation

Conference: Accelrys Solutions for Enhancing Research Innovation

On May 14, 2013, Posted by , In Conferences, By ,,, , With Comments Off on Conference: Accelrys Solutions for Enhancing Research Innovation

Accelrys Solutions for Enhancing Research Innovation, Frankfurt, Germany Christian Herhaus (Merck KGaA) gave a presentation: Addressing Research Questions by Integration of Open PHACTS with Pipeline Pilot

Open PHACTS featured in blog posts

On May 13, 2013, Posted by , In News, By ,,,,, , With Comments Off on Open PHACTS featured in blog posts

Open PHACTS has been featured on the ChEMBL and Corante blogs: ChEMBL blog: Direct submissions of data to ChEMBL and the Open PHACTS project by Stefan Senger Corante blog: In the Pipeline: Why Not Share More Bioactivity Data? by Derek Lowe

Conference: ASMC 2013

On May 8, 2013, Posted by , In Conferences, By ,,,, , With Comments Off on Conference: ASMC 2013

5th International Symposium on Advances in Synthetic and Medicinal Chemistry, Moscow, Russia Marcus Gastreich (BioSolveIT) represented Open PHACTS

Open PHACTS featured in RSC News article

On May 8, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS featured in RSC News article

Open PHACTS has been featured in the Royal Society of Chemistry news article Big data in drug discovery.

Open PHACTS Newsletter 2

On May 7, 2013, Posted by , In Newsletters, By ,,,,, , With Comments Off on Open PHACTS Newsletter 2

Contents: Using the Power of Open PHACTS: Community Workshop, 22-23 April 2013, London Public Release of the API Open PHACTS Explorer Public Release of ChemBioNavigator and PharmaTrek Recent Presentations and Publications Open PHACTS code now on GitHub Accelrys Hackathon & Community Website Recent Associated Partners View newsletter Sign up for…

W3C Provenance Recommendations are published

On May 3, 2013, Posted by , In News, By ,,, , With Comments Off on W3C Provenance Recommendations are published

The World Wide Web Consortium (W3C) has published the PROV Family of Documents as recommendations. PROV defines how to interchange provenance information between systems and has been developed with significant support from Open PHACTS. For more information see the W3C announcement, interview and a specifications overview.

Open PHACTS welcomes DIQA as an Associated Partner

On April 30, 2013, Posted by , In News, By ,,, , With Comments Off on Open PHACTS welcomes DIQA as an Associated Partner

Open PHACTS extends a warm welcome to our new Associated Partner DIQA Projektmanagement GmbH. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

PharmaTrek officially released

On April 29, 2013, Posted by , In News, By ,, , With Comments Off on PharmaTrek officially released

It is our pleasure to announce that PharmaTrek, one of the Example Applications developed within the project, has been officially released. To get started watch the demo video. Find out more about PharmaTrek and other example applications

Open PHACTS featured in BMJ Group blog

On April 26, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS featured in BMJ Group blog

Open PHACTS has been featured in the BMJ Web Development Blog: Open PHACTS: semantic technologies and drug discovery, by Claire Bower.

Project Meeting: Researchathon

On April 25, 2013, Posted by , In Project Meetings, By , With Comments Off on Project Meeting: Researchathon

Researchathon (London, UK) Participant List

Open PHACTS welcomes Oxford e-Research Centre as an Associated Partner

On April 24, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS welcomes Oxford e-Research Centre as an Associated Partner

Open PHACTS extends a warm welcome to our new Associated Partner the Oxford e-Research Centre. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

4th Open PHACTS Community Workshop

On April 23, 2013, Posted by , In Community Workshops, By , , With Comments Off on 4th Open PHACTS Community Workshop

Using the power of Open PHACTS (London, UK)

Conference: UK-QSAR Spring Meeting 2013

On April 23, 2013, Posted by , In Conferences, By ,,,, , With Comments Off on Conference: UK-QSAR Spring Meeting 2013

UK-QSAR and ChemoInformatics Group Spring Meeting 2013, Bedford, UK Marcus Gastreich (BioSolveIT) presented Open PHACTS

Open PHACTS developers’ page launched

On April 23, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS developers’ page launched

The developers’ page for the Open PHACTS API was officially launched at the 4th Open PHACTS Community Workshop in London. Check it out now at dev.openphacts.org Please contact pmu@openphacts.org if you would like to be added to the public developers’ mailing list.

ChemBioNavigator launched

On April 23, 2013, Posted by , In News, By ,,,,, , With Comments Off on ChemBioNavigator launched

We are proud to announce that ChemBioNavigator, one of the Example Applications developed within the project, has been launched. Try out ChemBioNavigator now ChemBioNavigator allows the user to visualise the chemical and biological space of a molecule group in a chemically-aware manner. The physicochemical properties of molecular groups can be plotted against…

Conference: NBIC 2013

Netherlands Bioinformatics Conference 2013, Lunteren, the Netherlands Andra Waagmeester (Maastricht University) gave a presentation: Visualizing Biological Linked Open Data Anwesha Bohler (Maastricht University) gave a presentation: PathVisio3: new features for pathway analysis and visualization

Conference: Bio-Assay Ontology Workshop

On April 16, 2013, Posted by , In Conferences, By ,,,,,,,,, , With Comments Off on Conference: Bio-Assay Ontology Workshop

Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) gave a presentation: ChEMBL bioassay data – Classification and data Exchange Mark Davies (EMBL-EBI) gave a presentation: ChEBML-RDF

Presentation: ChEMBL-RDF

On April 16, 2013, Posted by , In Presentations, By ,,,,,, , With Comments Off on Presentation: ChEMBL-RDF

Open PHACTS Bio-Assay Ontology Workshop, Miami, USA Mark Davies (EMBL-EBI) View presentation

Presentation: ChEMBL bioassay data – Classification and data exchange

On April 16, 2013, Posted by , In Presentations, By ,,,,, , With Comments Off on Presentation: ChEMBL bioassay data – Classification and data exchange

Bio-Assay Ontology Workshop, Miami, USA Anna Gaulton (EMBL-EBI) View presentation

New Open PHACTS brochure

On April 16, 2013, Posted by , In News, By ,, , With Comments Off on New Open PHACTS brochure

Find out more about Open PHACTS in our new informative brochure: Integrating pharmacological data: For scientists; for software and application developers; a semantic data integration infrastructure

One week until the 4th Open PHACTS Community Workshop

On April 14, 2013, Posted by , In News, By ,,,,, , With Comments Off on One week until the 4th Open PHACTS Community Workshop

The 4th Open PHACTS Community Workshop will be held in London on 22–23 April 2013. The workshop will inform participants of the overall aims and plans of Open PHACTS, emphasising Open PHACTS as a data service provider that can be integrated with and aid the development of third party applications….

Presentation: Open PHACTS: meaningful linking of preclinical drug discovery knowledge

On April 11, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Open PHACTS: meaningful linking of preclinical drug discovery knowledge

245th ACS National Meeting & Exposition, New Orleans, USA Egon Willighagen (Maastricht University) View presentation