Publication: Guidelines for exposing data as RDF in Open PHACTS
This is a “how to” guide for exposing your data in RDF in the Open PHACTS system. Carina Haupt, Andra Waagmeester, Marc Zimmerman, Egon Willighagen Full publication: Open PHACTS Working Draft 07 October 2013
Open PHACTS Support Portal Online
The Open PHACTS Support Portal is now online at support.openphacts.org.
Presentation: The Open PHArmacological Concepts Triple Store
OpenTox Euro 2013, Mainz, Germany Egon Willighagen (Maastricht University) View presentation
Conference: OpenTox Euro 2013
OpenTox Euro 2013, Mainz, Germany Egon Willighagen (Maastricht University) gave a presentation: The Open PHArmacological Concepts Triple Store
Pipeline Pilot update
A new version (1.5) of the Open PHACTS Pipeline Pilot component collection is now available. Try out the new components
Open PHACTS user support
We are happy to announce that the Open PHACTS support portal is now active, including a knowledge base, a forum and a ticket system: Use the knowledge base to look up answers to frequently asked questions and search our user documentation. Use the forum to post questions and comments for…
Presentation: Open PHACTS: A novel platform for integrated data-driven drug discovery
Europin Summer School in Drug Design, Vienna, Austria Gerhard Ecker (University of Vienna) View presentation
Presentation: Real-World Open PHACTS Use Cases
EBI Industry Workshop: Data integration and its application Lee Harland (Connected Discovery) View presentation
Conference: EMBL-EBI Industry Programme Workshop
EMBL-EBI Industry Programme Workshop: Data integration and its application, Cambridgeshire, UK Lee Harland (Connected Discovery) gave a presentation: Real-World Open PHACTS Use Cases
Conference: Europin Summer School in Drug Design
Europin Summer School in Drug Design, Vienna, Austria Christian Lemmen (University of Hamburg) presented ChemBioNavigator, and Gerhard Ecker (University of Vienna) gave a presentation: Open PHACTS: A novel platform for integrated data-driven drug discovery
Publication: Provenance: An Introduction to PROV
The World Wide Web is now deeply intertwined with our lives, and has become a catalyst for a data deluge, making vast amounts of data available online, at a click of a button. With Web 2.0, users are no longer passive consumers, but active publishers and curators of data. Hence,…
5th Community Workshop: Shaping the future of Open PHACTS
The Open PHACTS data integration project has achieved much since 2011, and the sustainability of the service and future scientific community development are the primary subject of this meeting. To this end, the not-for-profit successor organisation for the Open PHACTS project, the Open PHACTS Foundation, has recently been established. We…
Publication: Encoding units and unit types in RDF using QUDT
This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers. Egon Willighagen Full publication: Open PHACTS Working Draft 13 September 2013
New version of dataset description guidelines
We are pleased to announce that a new version of the dataset description guidelines has just been published. The latest version, dated 12 September 2013, is available from http://www.openphacts.org/specs/datadesc/. The key goal of this revision was to simplify the description of datasets to make it is easier for providers to…
Presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project
246th ACS National Meeting & Exposition, Indianapolis, USA Antony Williams (Royal Society of Chemistry) View presentation
Conference: 246th ACS National Meeting & Exposition
246th ACS National Meeting & Exposition, Indianapolis, USA Antony Williams (Royal Society of Chemistry) gave a presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project
Publication: Dataset Descriptions for the Open Pharmacological Space
This is a specification for the metadata to described datasets, and the linksets that relate them, to enable their use within the Open PHACTS discovery platform. The specification defines the metadata properties that are expected to describe datasets and linksets; detailing the creation and publication of the dataset. Details of…
Conference: MedChem Russia 2013
1st Russian Conference on Medicinal Chemistry, Moscow, Russia Marcus Gastreich (BioSolveIT) presented ChemBioNavigator
Presentation: Open PHACTS: An Introduction
diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) View presentation
Conference: diXa Training Course
diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) gave a presentation: Open PHACTS: An Introduction
Open PHACTS welcomes CompareNetworks as an Associated Partner
Open PHACTS extends a warm welcome to our new Associated Partner CompareNetworks. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!
Open PHACTS welcomes TGen as an Associated Partner
Open PHACTS extends a warm welcome to our new Associated Partner, the Translational Genomics Research Institute. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!
Helium for Excel Community uses the API
The June release of the Helium for Excel Community Edition from Ceiba Solutionscontains three functions that use the Open PHACTS API. This short video shows what these functions do.
Open PHACTS featured in ChEMBL blog
Open PHACTS has been featured in the ChEMBL blog: Open PHACTS KNIME and Pipeline Pilot Components.
Open PHACTS Project extended
The Open PHACTS project will be extended until the end of August 2014.
Webinar: Using the Open PHACTS API
Paul Groth (VU University Amsterdam) presents a webinar explaining how to use the Open PHACTS API: the data, technical setup, and what can be done with it. Watch presentation video | View presentation slides
Project Meeting: Business
Open PHACTS business planning meeting (London, UK)
Conference: Trends in natural products research
Young scientists’ meeting of PSE and the Austrian Pharmaceutical Society (ÖPhG), Tyrolia, Austria Gerhard Ecker (University of Vienna) demonstrated Open PHACTS at a workshop titled “The power of open data”
Presentation: Opening Up Pharmacological Space: The Open PHACTS API
2013 ISMB/ECCB Conference, Berlin, Germany Chris Evelo (Maastricht University) View presentation