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Presentation: Open PHACTS: A novel platform for integrated data-driven drug discovery

On September 19, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Open PHACTS: A novel platform for integrated data-driven drug discovery

Europin Summer School in Drug Design, Vienna, Austria Gerhard Ecker (University of Vienna) View presentation

Presentation: Real-World Open PHACTS Use Cases

On September 19, 2013, Posted by , In Presentations, By ,, , With Comments Off on Presentation: Real-World Open PHACTS Use Cases

EBI Industry Workshop: Data integration and its application Lee Harland (Connected Discovery) View presentation

Conference: EMBL-EBI Industry Programme Workshop

On September 19, 2013, Posted by , In Conferences, By ,,,,, , With Comments Off on Conference: EMBL-EBI Industry Programme Workshop

EMBL-EBI Industry Programme Workshop: Data integration and its application, Cambridgeshire, UK Lee Harland (Connected Discovery) gave a presentation: Real-World Open PHACTS Use Cases

Conference: Europin Summer School in Drug Design

On September 19, 2013, Posted by , In Conferences, By ,,,,,, , With Comments Off on Conference: Europin Summer School in Drug Design

Europin Summer School in Drug Design, Vienna, Austria Christian Lemmen (University of Hamburg) presented ChemBioNavigator, and Gerhard Ecker (University of Vienna) gave a presentation: Open PHACTS: A novel platform for integrated data-driven drug discovery

Publication: Provenance: An Introduction to PROV

On September 17, 2013, Posted by , In Publications, By ,,, , With Comments Off on Publication: Provenance: An Introduction to PROV

The World Wide Web is now deeply intertwined with our lives, and has become a catalyst for a data deluge, making vast amounts of data available online, at a click of a button. With Web 2.0, users are no longer passive consumers, but active publishers and curators of data. Hence,…

5th Community Workshop: Shaping the future of Open PHACTS

On September 13, 2013, Posted by , In News, By ,,, , With Comments Off on 5th Community Workshop: Shaping the future of Open PHACTS

The Open PHACTS data integration project has achieved much since 2011, and the sustainability of the service and future scientific community development are the primary subject of this meeting. To this end, the not-for-profit successor organisation for the Open PHACTS project, the Open PHACTS Foundation, has recently been established. We…

Publication: Encoding units and unit types in RDF using QUDT

On September 13, 2013, Posted by , In Publications, By ,,, , With Comments Off on Publication: Encoding units and unit types in RDF using QUDT

This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers. Egon Willighagen Full publication: Open PHACTS Working Draft 13 September 2013

New version of dataset description guidelines

On September 13, 2013, Posted by , In News, By ,,, , With Comments Off on New version of dataset description guidelines

We are pleased to announce that a new version of the dataset description guidelines has just been published. The latest version, dated 12 September 2013, is available from http://www.openphacts.org/specs/datadesc/. The key goal of this revision was to simplify the description of datasets to make it is easier for providers to…

Presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project

On September 12, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project

246th ACS National Meeting & Exposition, Indianapolis, USA Antony Williams (Royal Society of Chemistry) View presentation

Conference: 246th ACS National Meeting & Exposition

On September 12, 2013, Posted by , In Conferences, By ,,, , With Comments Off on Conference: 246th ACS National Meeting & Exposition

246th ACS National Meeting & Exposition, Indianapolis, USA Antony Williams (Royal Society of Chemistry) gave a presentation: Practical semantics in the pharmaceutical industry – the Open PHACTS project

Publication: Dataset Descriptions for the Open Pharmacological Space

On September 12, 2013, Posted by , In Publications, By ,,,,,,,, , With Comments Off on Publication: Dataset Descriptions for the Open Pharmacological Space

This is a specification for the metadata to described datasets, and the linksets that relate them, to enable their use within the Open PHACTS discovery platform. The specification defines the metadata properties that are expected to describe datasets and linksets; detailing the creation and publication of the dataset. Details of…

Conference: MedChem Russia 2013

On September 11, 2013, Posted by , In Conferences, By ,,,,, , With Comments Off on Conference: MedChem Russia 2013

1st Russian Conference on Medicinal Chemistry, Moscow, Russia Marcus Gastreich (BioSolveIT) presented ChemBioNavigator

Presentation: Open PHACTS: An Introduction

On September 4, 2013, Posted by , In Presentations, By ,,, , With Comments Off on Presentation: Open PHACTS: An Introduction

diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) View presentation

Conference: diXa Training Course

On September 4, 2013, Posted by , In Conferences, By ,,, , With Comments Off on Conference: diXa Training Course

diXa Training Course: Chemical and Biological resources for Toxicology and Toxicogenomics, Cambridgeshire, UK Anna Gaulton (European Bioinformatics Institute) gave a presentation: Open PHACTS: An Introduction

Open PHACTS welcomes CompareNetworks as an Associated Partner

On September 2, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS welcomes CompareNetworks as an Associated Partner

Open PHACTS extends a warm welcome to our new Associated Partner CompareNetworks. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

Open PHACTS welcomes TGen as an Associated Partner

On August 12, 2013, Posted by , In News, By ,, , With Comments Off on Open PHACTS welcomes TGen as an Associated Partner

Open PHACTS extends a warm welcome to our new Associated Partner, the Translational Genomics Research Institute. A full list of Associated Partners can be found here. Find out more about how you can get involved with Open PHACTS!

Open PHACTS Newsletter 3

On August 8, 2013, Posted by , In Newsletters, By ,,,,, , With Comments Off on Open PHACTS Newsletter 3

Contents: Open PHACTS project extended for 6 months Open PHACTS workflow integration portal now available Invitation to Open PHACTS training event Using the Open PHACTS API – Webinar video Helium for Excel Community Edition uses Open PHACTS API AQnowledge Bookmarklet links to Open PHACTS Explorer Open PHACTS Explorer updates Recent…

Helium for Excel Community uses the API

On August 5, 2013, Posted by , In News, By ,,,,, , With Comments Off on Helium for Excel Community uses the API

The June release of the Helium for Excel Community Edition from Ceiba Solutionscontains three functions that use the Open PHACTS API. This short video shows what these functions do.

Open PHACTS featured in ChEMBL blog

On August 2, 2013, Posted by , In News, By ,,,, , With Comments Off on Open PHACTS featured in ChEMBL blog

Open PHACTS has been featured in the ChEMBL blog: Open PHACTS KNIME and Pipeline Pilot Components.

Open PHACTS Project extended

On July 31, 2013, Posted by , In News, By , With Comments Off on Open PHACTS Project extended

The Open PHACTS project will be extended until the end of August 2014.

Webinar: Using the Open PHACTS API

On July 31, 2013, Posted by , In News,Presentations,Webinars, By ,,,,, , With Comments Off on Webinar: Using the Open PHACTS API

Paul Groth (VU University Amsterdam) presents a webinar explaining how to use the Open PHACTS API: the data, technical setup, and what can be done with it. Watch presentation video | View presentation slides

Project Meeting: Business

On July 30, 2013, Posted by , In Project Meetings, By , With Comments Off on Project Meeting: Business

Open PHACTS business planning meeting (London, UK)

Conference: Trends in natural products research

On July 25, 2013, Posted by , In Conferences, By ,, , With Comments Off on Conference: Trends in natural products research

Young scientists’ meeting of PSE and the Austrian Pharmaceutical Society (ÖPhG), Tyrolia, Austria Gerhard Ecker (University of Vienna) demonstrated Open PHACTS at a workshop titled “The power of open data”

Presentation: Opening Up Pharmacological Space: The Open PHACTS API

On July 23, 2013, Posted by , In Presentations, By ,,,,, , With Comments Off on Presentation: Opening Up Pharmacological Space: The Open PHACTS API

2013 ISMB/ECCB Conference, Berlin, Germany Chris Evelo (Maastricht University) View presentation

Conference: ISMB/ECCB 2013

On July 23, 2013, Posted by , In Conferences, By ,,,,,, , With Comments Off on Conference: ISMB/ECCB 2013

2013 ISMB/ECCB Conference, Berlin, Germany Chris Evelo (Maastricht University) gave a presentation: Opening Up Pharmacological Space: The Open PHACTS API and presented a poster: Scientific Lenses: An Approach to Dynamically Vary the Relationships between Datasets Andra Waagmeester (Maastricht University) presented a poster at the pre-meeting Tutorials: Visualizing Linked Open Data in Biological Pathways and…

Poster: Scientific Lenses: An Approach to Dynamically Vary the Relationships between Datasets

On July 21, 2013, Posted by , In Posters, By ,,,,,,,,,,,,,,,, , With Comments Off on Poster: Scientific Lenses: An Approach to Dynamically Vary the Relationships between Datasets

2013 ISMB/ECCB Conference, Berlin, Germany View poster

Workshop: Managing Knowledge about Tissues

On July 18, 2013, Posted by , In News, By ,, , With Comments Off on Workshop: Managing Knowledge about Tissues

We are delighted to invite you to the workshop Managing Knowledge about Tissues, which will be held this 30–31 October 2013 in Brussels, Belgium. The workshop is jointly organised by partners on the IMI projects DDMoRe, Open PHACTS and eTox, and hosted by the Innovative Medicines Initiative (IMI). This event will address the…

Open PHACTS Explorer update

On July 18, 2013, Posted by , In News, By , , With Comments Off on Open PHACTS Explorer update

Updates to the Open PHACTS Explorer have been implemented. Try the improved Open PHACTS Explorer and let us know what you think.

Publication: Improving data and knowledge management to better integrate health care and research

Once upon a time, several engineers, biologists and clinicians realized that a lot of information in biomedicine was partitioned into ‘silos’ that do not intercommunicate. These silos were a side effect of the existence of different disciplines required to, for example, develop new drugs. The engineers decided to dispose of the…

AQnowledge Bookmarklet links to Open PHACTS Explorer

On July 15, 2013, Posted by , In News, By , , With Comments Off on AQnowledge Bookmarklet links to Open PHACTS Explorer

The browser-based bookmarklet developed by AQnowledge identifies significant entities in scientific text, and provides links to further information such as the corresponding entry in the Open PHACTS Explorer. More information can be found on the AQnowledge semantic knowledge navigation page.